caffe 编译中出现的错误——fatal error: hdf5.h: 没有那个文件或目录 && /usr/bin/ld: cannot find -lhdf5

“fatal error: hdf5.h: 没有那个文件或目录”解决方法

参考自http://blog.csdn.net/hongye000000/article/details/51043913

Step 1

在Makefile.config文件的第85行，添加/usr/include/hdf5/serial/ 到 INCLUDE_DIRS，也就是把下面第一行代码改为第二行代码。

INCLUDE_DIRS := $(PYTHON_INCLUDE) /usr/local/include
INCLUDE_DIRS := $(PYTHON_INCLUDE) /usr/local/include /usr/include/hdf5/serial/

Step 2

在Makefile文件的第173行，把 hdf5_hl 和hdf5修改为hdf5_serial_hl 和 hdf5_serial，也就是把下面第一行代码改为第二行代码。

LIBRARIES += glog gflags protobuf boost_system boost_filesystem m hdf5_hl hdf5
LIBRARIES += glog gflags protobuf boost_system boost_filesystem m hdf5_serial_hl hdf5_serial

Step 3 /usr/bin/ld: cannot find -lhdf5 -lhdf5_hl

/usr/bin/ld: cannot find -lhdf5_hl
/usr/bin/ld: cannot find -lhdf5
collect2: error: ld returned 1 exit status
Makefile:582: recipe for target ‘.build_release/lib/libcaffe.so.1.0.0’ failed
make: *** [.build_release/lib/libcaffe.so.1.0.0] Error 1

在Makefile.config文件的第85行，添加/usr/include/hdf5/serial/ 到 INCLUDE_DIRS，也就是把下面第一行代码改为第二行代码。

LIBRARY_DIRS := $(PYTHON_LIB) /usr/local/lib /usr/lib 
LIBRARY_DIRS := $(PYTHON_LIB) /usr/local/lib /usr/lib /usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/hdf5/serial/

import caffe
Traceback (most recent call last):
File “”, line 1, in
File “/home/crrc/caffe/distribute/python/caffe/init.py”, line 1, in
from .pycaffe import Net, SGDSolver, NesterovSolver, AdaGradSolver, RMSPropSolver, AdaDeltaSolver, AdamSolver, NCCL, Timer
File “/home/crrc/caffe/distribute/python/caffe/pycaffe.py”, line 13, in
from ._caffe import Net, SGDSolver, NesterovSolver, AdaGradSolver,
ImportError: libcudart.so.9.1: cannot open shared object file: No such file or directory

quit()

add /usr/local/cuda/lib64 to LIBRARY_DIRS as

LIBRARY_DIRS := $(PYTHON_LIB) /usr/local/lib /usr/lib /usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/hdf5/serial/ /usr/local/cuda/lib64